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The SWATHAtlas at the Institute for Systems Biology is a resource for planning your SWATH™ experiments, depositing published SWATH™ experiments, and exploring the results of deposited datasets.
The SWATHAtlas project is still in development. Phase 1 of the project will make available some initial spectral libraries that are designed to aid in SWATH™ data processing for several species. Phase 2 will enable the ability to query and explore a set of seed datasets from ISB and ETH Zurich. Phase 3 will enable on-line, custom analysis of SWATH™ datasets in the repository.
Current SWATH Libraries (View)
| Ecoli 4,000 protein 2020 |
~92% covering 4,014 of the 4,389 annotated E. coli proteins |
Midha M. et. al. |
| H sapiens 10,000 protein 2014 |
51%, 10,316 of 20218 proteins |
Rosenberger et al 2014 |
| H sapiens HLA subtypes |
|
Caron et al 2014 |
| Human SRMAtlas 2016 |
99% |
Kusebauch, Moritz et al |
| Human breast cancer library 2019 |
|
Bouchal et al. 2019 |
| HumanTcell2020 |
24% (4,833 of 20,240 proteins) |
Weerakoon H. et. al. 2020 |
| M tuberculosis comprehensive library 2015 |
99%, 3984 of 4012 proteins |
Schubert et. al 2015 |
| Methylobacterium extorquens PA1 - comprehensive library 2016 |
71%, 3440 of 4829 proteins |
Müller et al., 2016 |
| Mouse Immunopeptidome |
|
Caron et al 2018 |
| MouseRefSWATH |
62.2% (10597 of 16998 proteins) |
Krasny et. al. 2020 |
| Pseudomonas syringae DC3000 - comprehensive library 2016 |
62%, 3406 of 5481 proteins |
Müller et al., 2016 |
| Rat (Sertoli cell) |
14.6%, 3127 of 21,464 proteins |
Dr. Kamal Mandal et. al |
| S aureus HG001 SWATH Atlas |
72% (2091 of 2891 proteins) |
Michalik S, Schmidt F, et al |
| S cerevisiae synthetic peptide full proteome 2013 |
98%, 6475 of 6607 proteins |
Picotti et al 2013 |
| Sphingomonas melonis Fr1 - comprehensive library 2016 |
71%, 2729 of 3857 proteins |
Müller et al., 2016 |
| Zebrafish multi-tissue 2019 |
40.4%, 10,405 of ~25,500 proteins (ensembl) |
Blattmann et al |
SWATH Atlas News
| 2020-10-16: DIALib-QC ion-library assessment tool published in Nature Communication. | | 2020-09-29: HumanTcell2020 released (Weerakoon H et. al 2020). | | 2020-09-15: Ecoli SWATH assay library released (Midha M et. al 2020). | | 2020-06-18: Comprehensive mouse reference spectral library (Kransy et. al 2020). | | 2019-11-08: DIALib-QC ion-library assessment tool released. | | 2018-05-29: Mouse MHC Class I Immunopeptidome released (Caron et al). | | 2017-09-07: Staphylococcus aureus HG001 SWATH libraries released (Schmidt et al). | | 2016-03-06: Human breast cancer SWATH libraries released (Bouchal et al). | | 2015-07-14: Human HLA immunoproteome SWATH libraries released (Caron et al). | | 2015-05-04: Comprehensive M tuberculosis SWATH library released (Schubert et al. in press). | | 2014-08-06: Human 10,000 protein SWATH library released (Rosenberger et al. 2014 (in press)). | | 2014-04-08: Dr. Samuel Bader presents SWATH Atlas at US HUPO in Seattle. | | 2014-04-04: Mtb SWATH libraries based on Mtb SRM Atlas data released (Schubert et al. 2013 ). | | 2014-04-01: SWATHAtlas.org website launched |
Explore SWATH Atlas
 your raw data to SWATHAtlas |
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