About

The SWATHAtlas at the Institute for Systems Biology is a resource for planning your DIA/SWATH™ experiments, depositing published experimental high-quality spectral assay libraries, and exploring the results of these uploaded datasets.

The SWATHAtlas project makes available spectral libraries that are designed to aid in SWATH™ data processing for several species. It enables the ability to query and explore a set of seed datasets on-line, custom analysis of SWATH™ datasets in the repository. Users have the option to analyze and repair spectral ion libraries using the DIALib-QC tool.

Explore

Current Libraries

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News

2021-06-27: Chinese hamster ovary (CHO) spectral library released Nature Scientific Data.
2021-06-08: DIA Pan human library (DPHL) in Orbtrap QE released Genomics, Proteomics & Bioinformatics.
2020-10-16: DIALib-QC ion-library assessment tool published in Nature Communications.
2020-09-29: HumanTcell2020 released (Weerakoon H et. al 2020).
2020-09-15: Ecoli SWATH assay library released (Midha M et. al 2020).
2020-06-18: Comprehensive mouse reference spectral library (Kransy et. al 2020).
2019-11-08: DIALib-QC ion-library assessment tool released.
2018-05-29: Mouse MHC Class I Immunopeptidome released (Caron et al).
2017-09-07: Staphylococcus aureus HG001 SWATH libraries released (Schmidt et al).
2016-03-06: Human breast cancer SWATH libraries released (Bouchal et al).
2015-07-14: Human HLA immunoproteome SWATH libraries released (Caron et al).
2015-05-04: Comprehensive M tuberculosis SWATH library released (Schubert et al.).
2014-08-06: Human 10,000 protein SWATH library released (Rosenberger et al. 2014 ).
2014-04-08: Dr. Samuel Bader presents SWATH Atlas at US HUPO in Seattle.
2014-04-04: Mtb SWATH libraries based on Mtb SRM Atlas data released (Schubert et al. 2013 ).
2014-04-01: SWATHAtlas.org website launched

Publications

A publication describing the SWATHAtlas is in progress. For now, please use the reference URL swathatlas.org for citing, and check back later for its publication.