SWATHAtlas Home

Data Access
  Download Libraries   Customize Libraries


Background
  Publications   Data Contributors   About SWATH MS


Related Resources
   Peptide Atlas
   SRM Atlas
   PASSEL
   PASS



  LOGIN



The SWATHAtlas at the Institute for Systems Biology is a resource for planning your SWATH™ experiments, depositing published SWATH™ experiments, and exploring the results of deposited datasets.

The SWATHAtlas project is still in development. Phase 1 of the project will make available some initial spectral libraries that are designed to aid in SWATH™ data processing for several species. Phase 2 will enable the ability to query and explore a set of seed datasets from ISB and ETH Zurich. Phase 3 will enable on-line, custom analysis of SWATH™ datasets in the repository.


Current SWATH Libraries

  (View)

Library Proteome Coverage Contributors
H sapiens 10,000 protein 2014 51%, 10,316 of 20218 proteins Rosenberger et al 2014
H sapiens HLA subtypes Caron et al 2014
M tuberculosis comprehensive library 2015 99%, 3984 of 4012 proteins Schubert et. al 2015
Methylobacterium extorquens PA1 - comprehensive library 2016 71%, 3440 of 4829 proteins Müller et al., 2016
Pseudomonas syringae DC3000 - comprehensive library 2016 62%, 3406 of 5481 proteins Müller et al., 2016
S cerevisiae synthetic peptide full proteome 2013 98%, 6475 of 6607 proteins Picotti et al 2013
Sphingomonas melonis Fr1 - comprehensive library 2016 71%, 2729 of 3857 proteins Müller et al., 2016


SWATH Atlas News

2015-07-14: Human HLA immunoproteome SWATH libraries released (Caron et al).
2015-05-04: Comprehensive M tuberculosis SWATH library released (Schubert et al. in press).
2014-08-06: Human 10,000 protein SWATH library released (Rosenberger et al. 2014 (in press)).              
2014-04-08: Dr. Samuel Bader presents SWATH Atlas at US HUPO in Seattle.
2014-04-04: Mtb SWATH libraries based on Mtb SRM Atlas data released (Schubert et al. 2013 ).
2014-04-01: SWATHAtlas.org website launched


Explore SWATH Atlas


Download Libraries

Customize Libraries

Related publications

Data Contributors

About SWATH MS



your raw data to SWATHAtlas




SWATHAtlas
© 2013-2014, Institute for Systems Biology. All Rights Reserved